STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004500Cell division cycle protein cdt2. (706 aa)    
Predicted Functional Partners:
BK809_0001666
DNA damage-binding protein 1a.
    
 0.986
BK809_0004572
Cullin-4A; Belongs to the cullin family.
    
 0.982
BK809_0007348
Vezatin domain-containing protein.
   
 0.960
BK809_0007699
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.960
BK809_0006021
E3 ubiquitin-protein ligase RBX1.
    
 0.913
BK809_0002360
Cell division control protein; Belongs to the CDC6/cdc18 family.
   
  
 0.906
BK809_0001680
Minichromosome loss protein 1.
   
  
 0.904
BK809_0002085
Exodeoxyribonuclease 1.
   
 
 0.857
BK809_0000240
DNA replication licensing factor mcm10.
   
  
 0.856
BK809_0002835
Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.
   
    0.836
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.