STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004646GRIP domain-containing protein. (374 aa)    
Predicted Functional Partners:
BK809_0004633
Putative guanylate kinase.
 
   
 0.934
URM1
Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...]
    
 0.927
BK809_0000493
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
  
 0.866
BK809_0003546
GMP synthase [glutamine-hydrolyzing].
  
 
 0.827
BK809_0004243
Nucleoside diphosphate kinase.
   
 0.814
BK809_0003717
Putative adenine phosphoribosyltransferase 1.
  
 
 0.803
BK809_0000304
FAD-linked oxidoreductase.
  
 
 0.803
BK809_0003511
Golgi apyrase; Belongs to the GDA1/CD39 NTPase family.
    
  0.798
BK809_0001102
Protein CASP.
    
 
 0.786
BK809_0001509
Meiotically up-regulated gene 71 protein.
   
 0.784
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.