STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004810ATP-dependent RNA helicase mtr4. (1073 aa)    
Predicted Functional Partners:
BK809_0004469
Exosome complex component RRP46.
   
 0.995
BK809_0004929
Exosome complex component rrp45.
   
 0.995
BK809_0003398
Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.
   
 
 0.992
BK809_0001949
Putative exosome complex exonuclease rrp4.
   
 0.990
BK809_0007517
Putative WD repeat-containing protein.
   
 0.990
BK809_0002887
Putative 3 exoribonuclease family protein.
   
 0.986
BK809_0004501
rRNA biogenesis protein rrp5.
   
 0.986
BK809_0008028
Uncharacterized protein.
   
 
 0.983
BK809_0003495
Exosome complex component mtr3.
   
 0.982
BK809_0005389
Exosome complex component rrp40.
   
 0.982
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.