STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005063Putative RING finger protein. (809 aa)    
Predicted Functional Partners:
BK809_0002555
Putative ubiquitin-40s ribosomal protein s31 fusion protein.
    
 0.719
BK809_0002836
Putative basic-leucine zipper transcription factor.
    
 0.719
BK809_0003125
CIA30 domain-containing protein.
    
 0.719
BK809_0001377
N-acetyltransferase eso1.
    
 0.692
BK809_0004118
UmuC domain-containing protein.
    
 0.692
BK809_0002151
Uncharacterized protein.
    
 0.692
BK809_0004123
Replication factor C subunit 5.
   
 
  0.628
BK809_0002529
DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.
    
 0.587
BK809_0000800
DNA repair protein REV1.
    
 0.587
BK809_0000577
DNA polymerase kappa.
    
 0.587
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.