STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004889Ubiquitin carboxyl-terminal hydrolase 24; Belongs to the peptidase C19 family. (2044 aa)    
Predicted Functional Partners:
BK809_0003742
Putative ubiquitin fusion degradation protein C12B10.01c.
   
 
 0.832
BK809_0002541
WD repeat-containing protein.
    
 0.814
BK809_0007372
Peroxisomal targeting signal receptor.
    
 0.732
BK809_0002555
Putative ubiquitin-40s ribosomal protein s31 fusion protein.
    
  0.668
BK809_0002836
Putative basic-leucine zipper transcription factor.
    
  0.668
BK809_0003125
CIA30 domain-containing protein.
    
  0.668
BK809_0002373
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
  0.657
BK809_0002129
Putative an1-type zinc finger protein.
    
  0.633
BK809_0006529
Ubiquitin-60S ribosomal protein L40.
    
  0.633
BK809_0004781
E3 ubiquitin-protein ligase.
    
 0.629
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.