STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004954Rhamnogalacturonan acetylesterase rhgT. (259 aa)    
Predicted Functional Partners:
BK809_0001423
Pyridoxal biosynthesis protein PDX2.
  
 0.973
BK809_0003546
GMP synthase [glutamine-hydrolyzing].
    
 0.640
BK809_0003306
Putative pyridoxamine 5'-phosphate oxidase.
    
 0.629
BK809_0000890
Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. Belongs to the HisA/HisF family.
    
 0.613
BK809_0003510
Putative glutamine amidotransferase-like protein.
    
 0.603
BK809_0005629
Putative glutamine amidotransferase-like protein.
    
 0.603
BK809_0007270
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.580
BK809_0006418
NADPH:adrenodoxin oxidoreductase, mitochondrial.
    
  0.580
BK809_0004019
Putative glutamate synthase [NADPH].
   
 
  0.580
BK809_0001888
L-asparaginase 2-4; Belongs to the asparaginase 1 family.
    
 0.578
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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