STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004987Protein RTM1. (375 aa)    
Predicted Functional Partners:
BK809_0003172
3-ketodihydrosphingosine reductase tsc10.
     
 0.894
BK809_0001225
Putative sphinganine hydroxylase sur2; Belongs to the sterol desaturase family.
   
 0.727
BK809_0003513
Dihydrosphingosine 1-phosphate phosphatase.
    
 0.725
BK809_0005024
Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.
    
 0.698
BK809_0000768
Inositol phosphosphingolipids phospholipase C.
     
 0.665
BK809_0002885
Sphingoid long chain base kinase 4.
     
 0.664
BK809_0004296
Ceramide glucosyltransferase.
     
 0.663
BK809_0001046
Neutral ceramidase.
     
 0.659
BK809_0003215
Putative alkaline ceramidase.
    
 0.651
BK809_0004460
Alkaline ceramidase YDC1.
    
 0.651
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.