STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0001439Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (598 aa)    
Predicted Functional Partners:
BK809_0004308
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.989
BK809_0005795
Protein LTV1.
   
 0.984
BK809_0002673
Putative ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.
    
 0.975
BK809_0006147
Putative 40s ribosomal protein s14; Belongs to the universal ribosomal protein uS11 family.
    
 0.966
BK809_0007162
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.959
BK809_0000942
Putative 40s ribosomal protein s5; Belongs to the universal ribosomal protein uS7 family.
   
 0.949
BK809_0007500
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.949
BK809_0001206
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
    
  0.939
BK809_0007155
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.934
BK809_0001793
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.931
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.