STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0001486Uncharacterized protein. (157 aa)    
Predicted Functional Partners:
BK809_0004343
CCHC-type domain-containing protein.
    
 0.732
BK809_0001422
Nuclear cap-binding protein subunit 2.
    
  0.727
BK809_0007004
Transcription initiation factor IIF subunit alpha.
   
  0.722
BK809_0006268
Pre-mRNA-splicing factor srp2.
   
 0.712
BK809_0000400
Pre-mRNA-splicing factor srp1.
   
 0.712
BK809_0000756
Pre-mRNA-splicing factor srp1.
   
 0.712
BK809_0005096
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
   
 0.698
BK809_0000493
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
     
 0.697
BK809_0002181
Putative kh domain rna binding protein.
   
  0.689
BK809_0007086
RNA-binding protein rnc1.
   
  0.689
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.