STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000224Sialidase domain-containing protein. (357 aa)    
Predicted Functional Partners:
BK809_0008028
Uncharacterized protein.
   
 0.988
BK809_0004131
Ribosome biogenesis protein tsr1-like protein.
   
 0.984
BK809_0004308
20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.
   
 0.980
BK809_0003390
Serine/threonine-protein kinase rio2.
   
 0.976
BK809_0005795
Protein LTV1.
   
 0.976
BK809_0000766
Putative u3 small nucleolar ribonucleoprotein imp3.
   
 0.975
BK809_0005284
Protein bfr-2.
   
 
 0.963
BK809_0005477
Putative 40s ribosomal protein s9; Belongs to the universal ribosomal protein uS4 family.
   
  0.954
BK809_0000955
U3 small nucleolar RNA-associated protein 10.
   
 
 0.954
BK809_0007911
U3 small nucleolar ribonucleoprotein IMP4.
   
 
 0.954
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.