STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0001592Uncharacterized protein. (471 aa)    
Predicted Functional Partners:
BK809_0005702
Uncharacterized protein.
   
 
 0.944
BK809_0005718
NADH-ubiquinone oxidoreductase 29.9 kDa subunit, mitochondrial.
   
 
 0.911
BK809_0007556
RNA polymerase I-specific transcription initiation factor rrn3.
    
 
 0.834
BK809_0006758
Putative copper-transporting atpase.
    
 0.825
BK809_0000222
P-type cation-transporting ATPase.
    
 0.825
BK809_0000218
P-type cation-transporting ATPase.
    
 0.825
BK809_0007400
Putative copper-transporting ATPase HMA5.
    
 0.825
BK809_0005334
P-type cation-transporting ATPase.
    
 0.825
BK809_0002129
Putative an1-type zinc finger protein.
   
 
 0.698
BK809_0006529
Ubiquitin-60S ribosomal protein L40.
   
 
 0.698
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.