STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000629ATP-dependent RNA helicase sub2. (443 aa)    
Predicted Functional Partners:
BK809_0001346
THO complex subunit 4-A.
   
 0.998
BK809_0006149
Putative RNA-binding protein.
   
 0.978
BK809_0003715
Putative rna-binding protein 8a.
   
 0.974
BK809_0006281
Uncharacterized protein.
   
 0.971
BK809_0000718
Putative THOC5 family protein.
   
 0.971
BK809_0002435
Uncharacterized protein.
   
 0.967
BK809_0000502
Putative sap domain protein.
   
 0.964
BK809_0004384
Putative antibiotic biosynthesis monooxygenase.
   
 0.964
BK809_0001590
Putative ATP-dependent RNA helicase DHX35.
   
 0.958
BK809_0001608
Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22.
   
 0.958
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.