STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0003919Putative transporter. (601 aa)    
Predicted Functional Partners:
BK809_0002535
Putative stomatin family protein.
    
 0.653
BK809_0006107
ATPase family gene 2 protein; Belongs to the AAA ATPase family.
    
  0.610
BK809_0005169
Cell division control protein 48; Belongs to the AAA ATPase family.
    
  0.610
BK809_0004704
Cell division control protein 42-like protein.
    
  0.583
BK809_0005484
Ras-related C3 botulinum toxin substrate 1.
    
  0.583
BK809_0004646
GRIP domain-containing protein.
    
  0.561
BK809_0002581
Vesicular-fusion protein sec18.
    
  0.553
BK809_0005915
Alpha-actinin-like protein 1.
     
 0.534
BK809_0005978
CRIB domain-containing protein.
     
 0.534
BK809_0000038
NAD_binding_9 domain-containing protein.
    
  0.524
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.