STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0003962Tetratricopeptide repeat protein 36-like protein. (247 aa)    
Predicted Functional Partners:
BK809_0002277
Homogentisate 1,2-dioxygenase.
   
  
 0.531
BK809_0003109
Homogentisate 1,2-dioxygenase.
   
  
 0.531
BK809_0002127
Fumarylacetoacetase.
   
  
 0.486
BK809_0003108
Fumarylacetoacetase.
   
  
 0.486
BK809_0005071
Fumarylacetoacetase.
   
  
 0.440
BK809_0007324
3-hydroxyanthranilate 3,4-dioxygenase.
   
  
 0.416
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.