STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000291AAA domain-containing protein. (435 aa)    
Predicted Functional Partners:
BK809_0007609
Nuclear protein localization protein 4.
   
 0.833
BK809_0007660
Protein OS-9-like protein.
    
 0.821
BK809_0002800
Putative ubiquitin thioesterase otu1.
   
 0.820
BK809_0004277
UBX domain-containing protein 1.
   
 0.814
BK809_0004999
Putative ubx domain-containing protein.
    
 0.795
BK809_0001172
UBX domain-containing protein 10.
    
 0.784
BK809_0001535
Proteasome subunit beta.
   
 0.781
BK809_0001495
Tether containing UBX domain for GLUT4.
    
 0.761
BK809_0003391
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.761
BK809_0006953
TRAF-type zinc finger domain-containing protein 1.
    
 0.747
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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