STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_000402426S proteasome regulatory subunit rpn-8. (360 aa)    
Predicted Functional Partners:
BK809_0007737
Putative 26s proteasome non-atpase regulatory subunit 4.
   
 0.999
BK809_0002223
26S protease regulatory subunit 6B-like protein; Belongs to the AAA ATPase family.
  
 0.999
BK809_0005639
Putative 26s proteasome non-atpase regulatory subunit 12.
   
 0.999
BK809_0007392
26S protease regulatory subunit 7-like protein; Belongs to the AAA ATPase family.
   
 0.999
BK809_0000813
Putative 26s proteasome non-atpase regulatory subunit 11.
   
 0.999
BK809_0002729
26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.999
BK809_0006287
26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.
  
 0.999
BK809_0006170
26S protease regulatory subunit 8-like protein; Belongs to the AAA ATPase family.
   
 0.999
BK809_0003391
26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.
   
 0.999
BK809_0003455
26S proteasome regulatory subunit rpn11.
   
0.999
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
Server load: low (30%) [HD]