STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0003869Xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family. (516 aa)    
Predicted Functional Partners:
BK809_0001091
Anaphase-promoting complex subunit 10.
    
 0.600
BK809_0005031
Ankyrin repeat protein nuc-2.
    
 0.563
BK809_0003600
UPF0317 protein.
    
  0.545
BK809_0007226
Activator of stress genes 1.
    
  0.545
BK809_0007318
Cutinase transcription factor 1 alpha.
    
  0.545
BK809_0002926
Cutinase transcription factor 1 beta.
    
  0.545
BK809_0006725
WD repeat-containing protein slp1.
    
  0.520
BK809_0001017
Polyadenylation factor subunit 2.
    
  0.520
BK809_0001311
Uncharacterized protein.
    
  0.520
BK809_0001794
Putative WD repeat-containing protein.
    
  0.520
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.