STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004038TFIIH basal transcription factor complex p47 subunit. (428 aa)    
Predicted Functional Partners:
BK809_0003577
Putative RNA polymerase II transcription factor B subunit 1.
    
 0.998
BK809_0002946
RNA polymerase II transcription factor B subunit 4.
   
 0.998
BK809_0002572
DNA repair helicase rad15.
    
 0.997
BK809_0006244
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.997
BK809_0003806
RNA polymerase II transcription factor B subunit 3.
   
 0.996
BK809_0003361
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
   
 0.993
BK809_0004883
Transcription initiation factor IIE subunit alpha.
   
 0.993
BK809_0003904
DNA repair helicase RAD25.
    
 0.993
BK809_0005927
Cyclin CCL1.
   
 0.977
BK809_0006955
Putative transcription initiation factor iib.
    
 0.975
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.