STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0004359Vacuolar protein sorting-associated protein 54. (1087 aa)    
Predicted Functional Partners:
BK809_0006527
Vacuolar protein sorting-associated protein 52.
    
 0.994
BK809_0007461
Vacuolar protein sorting-associated protein 53-like protein.
   
 0.977
BK809_0007383
Thioredoxin reductase.
   
 0.965
BK809_0002010
t-SNARE affecting a late Golgi compartment protein 2; Belongs to the syntaxin family.
    
 0.860
BK809_0004274
t-SNARE affecting a late Golgi compartment protein 1.
    
 0.855
BK809_0003399
GTP-binding protein ryh1.
    
 0.843
BK809_0002622
Conserved oligomeric Golgi complex subunit 4.
    
 0.821
BK809_0002416
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
    
 0.817
BK809_0001008
Conserved oligomeric Golgi complex subunit 8.
    
 0.817
BK809_0003073
Syntaxin-52.
    
 0.808
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.