STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002113Uncharacterized protein. (155 aa)    
Predicted Functional Partners:
BK809_0004920
SH3 domain-containing protein.
   
 0.850
BK809_0000554
E3 ubiquitin-protein ligase HERC2.
   
  0.605
BK809_0002538
Xylosyltransferase oxt.
    
  0.504
BK809_0003455
26S proteasome regulatory subunit rpn11.
    
  0.498
BK809_0002197
Transcription factor tau subunit sfc4.
    
  0.495
BK809_0004269
Putative rna polymerase iii transcription factor.
    
  0.493
BK809_0007012
Urea amidolyase.
    
 0.489
BK809_0005047
SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.458
BK809_0002058
Ubiquitin-like protein SMT3.
    
  0.456
BK809_0000109
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
    
 0.454
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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