STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002203Protein SAP1; Belongs to the AAA ATPase family. (820 aa)    
Predicted Functional Partners:
BK809_0002602
Vacuolar protein sorting-associated protein IST1.
    
 0.916
BK809_0002416
Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.
 
 
  0.915
BK809_0006185
Charged multivesicular body protein 1.
    
 0.833
BK809_0002868
Vacuolar protein-sorting-associated protein 24.
   
 0.787
BK809_0001668
Uncharacterized protein.
     
 0.762
BK809_0007609
Nuclear protein localization protein 4.
    
 0.758
BK809_0004044
Putative vesicular-fusion protein sec17-like protein.
    
 0.737
BK809_0004277
UBX domain-containing protein 1.
   
 0.701
BK809_0007900
DOA4-independent degradation protein 4.
    
 0.701
BK809_0002041
Charged multivesicular body protein 6.
     
 0.694
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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