BK809_0003277 protein (Diplodia seriata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BK809_0003277

Aspartate aminotransferase. (408 aa)

Predicted Functional Partners:

BK809_0006761

0.861

BK809_0004095

0.780

BK809_0006824

0.747

BK809_0005867

0.747

BK809_0001848

0.732

BK809_0004644

0.674

BK809_0002426

0.673

BK809_0003565

0.673

BK809_0005995

0.667

BK809_0000711

0.662

Your Current Organism:

Diplodia seriata

NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BK809_0000711	BK809_0001848	A0A1S8BBR1	A0A0G2GFZ8	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Fumarate hydratase, mitochondrial.	0.982
BK809_0000711	BK809_0003277	A0A1S8BBR1	A0A1S8BFL0	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Aspartate aminotransferase.	0.662
BK809_0000711	BK809_0003565	A0A1S8BBR1	A0A1S8BG16	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Chorismate mutase.	0.766
BK809_0000711	BK809_0004095	A0A1S8BBR1	A0A1S8BD93	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Aspartate aminotransferase.	0.844
BK809_0000711	BK809_0005867	A0A1S8BBR1	A0A1S8BNV8	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Malate dehydrogenase.	0.944
BK809_0000711	BK809_0006824	A0A1S8BBR1	A0A1S8B4Z9	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Malate dehydrogenase.	0.944
BK809_0001848	BK809_0000711	A0A0G2GFZ8	A0A1S8BBR1	Fumarate hydratase, mitochondrial.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.982
BK809_0001848	BK809_0003277	A0A0G2GFZ8	A0A1S8BFL0	Fumarate hydratase, mitochondrial.	Aspartate aminotransferase.	0.732
BK809_0001848	BK809_0003565	A0A0G2GFZ8	A0A1S8BG16	Fumarate hydratase, mitochondrial.	Chorismate mutase.	0.755
BK809_0001848	BK809_0004095	A0A0G2GFZ8	A0A1S8BD93	Fumarate hydratase, mitochondrial.	Aspartate aminotransferase.	0.887
BK809_0001848	BK809_0005867	A0A0G2GFZ8	A0A1S8BNV8	Fumarate hydratase, mitochondrial.	Malate dehydrogenase.	0.973
BK809_0001848	BK809_0005995	A0A0G2GFZ8	A0A0G2E885	Fumarate hydratase, mitochondrial.	Aspartokinase.	0.805
BK809_0001848	BK809_0006824	A0A0G2GFZ8	A0A1S8B4Z9	Fumarate hydratase, mitochondrial.	Malate dehydrogenase.	0.973
BK809_0002426	BK809_0003277	A0A1S8B211	A0A1S8BFL0	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aspartate aminotransferase.	0.673
BK809_0002426	BK809_0003565	A0A1S8B211	A0A1S8BG16	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Chorismate mutase.	0.625
BK809_0002426	BK809_0004095	A0A1S8B211	A0A1S8BD93	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Aspartate aminotransferase.	0.950
BK809_0002426	BK809_0004644	A0A1S8B211	A0A0G2ELD0	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.955
BK809_0002426	BK809_0005867	A0A1S8B211	A0A1S8BNV8	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Malate dehydrogenase.	0.832
BK809_0002426	BK809_0006824	A0A1S8B211	A0A1S8B4Z9	NAD-specific glutamate dehydrogenase; NAD(+)-dependent glutamate dehydrogenase which degrades glutamate to ammonia and alpha-ketoglutarate. Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Malate dehydrogenase.	0.832
BK809_0003277	BK809_0000711	A0A1S8BFL0	A0A1S8BBR1	Aspartate aminotransferase.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.662