STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0003800Calpain-8; Belongs to the peptidase C2 family. (1188 aa)    
Predicted Functional Partners:
BK809_0007701
Programmed cell death protein 6.
   
 0.880
BK809_0007144
pH-response transcription factor pacC.
   
 0.509
BK809_0000985
Putative vacuolar-sorting protein snf7.
    
 
 0.488
BK809_0002674
Serine/threonine-protein phosphatase.
    
  0.472
BK809_0006645
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.472
BK809_0000737
Cohesin subunit rad21.
    
  0.471
BK809_0005394
pH-response regulator protein palI/RIM9.
    
 
 0.451
BK809_0006427
Putative Rho-type GTPase-activating protein 4.
   
  0.432
BK809_0007327
Monopolin complex subunit pcs1.
    
 
 0.415
BK809_0002686
Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase.
   
 
  0.413
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.