STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000098Glutamyl-tRNA(Gln) amidotransferase subunit A. (278 aa)    
Predicted Functional Partners:
BK809_0000837
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
 
 0.939
BK809_0000570
Aspartate--tRNA ligase, mitochondrial.
  
 0.752
BK809_0001174
Bifunctional nitrilase/nitrile hydratase NIT4A.
    
 0.668
BK809_0004225
Aliphatic nitrilase.
    
 0.668
BK809_0000404
Aliphatic nitrilase.
    
 0.668
BK809_0008069
Glutamate--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.644
BK809_0000731
Acetamidase.
  
  
 0.637
BK809_0004294
Putative glutamate--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.616
BK809_0006821
Putative glutaminyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.616
BK809_0003798
Acetamidase.
  
 
  0.616
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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