STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000125Histone deacetylase clr3. (889 aa)    
Predicted Functional Partners:
BK809_0006761
RanBD1 domain-containing protein.
    
 0.960
BK809_0002460
Transcription factor prr1.
    
 0.959
BK809_0002193
Histone H2B; Belongs to the histone H2B family.
    
 0.923
BK809_0004345
Histone acetyltransferase type B subunit 2.
   
 0.897
BK809_0002194
Histone H2A; Belongs to the histone H2A family.
    
 0.896
BK809_0006383
GATA type zinc finger protein asd-4.
    
 0.872
BK809_0005700
Uncharacterized protein.
    
 0.852
BK809_0001366
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.838
BK809_0002324
Methyl-CpG-binding domain protein 4.
    
 0.801
BK809_0006030
Histone H2A; Belongs to the histone H2A family.
   
 0.797
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.