STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000517Uncharacterized protein. (451 aa)    
Predicted Functional Partners:
BK809_0003008
Chromatin structure-remodeling complex subunit sfh1.
    
 0.815
BK809_0002178
Actin-related protein 4; Belongs to the actin family.
    
 0.803
BK809_0006547
SWI/SNF and RSC complexes subunit ssr2.
    
 0.802
BK809_0005724
SWI/SNF and RSC complexes subunit ssr3.
    
 0.800
BK809_0001366
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.725
BK809_0002406
SWI/SNF chromatin-remodeling complex subunit snf5.
    
 0.682
BK809_0001564
Upstream activation factor subunit spp27.
    
 0.670
BK809_0007448
Protein polybromo-1.
    
 0.666
BK809_0002769
Chromatin structure-remodeling complex subunit RSC1.
    
 0.666
BK809_0005096
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
    
  0.655
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.