STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0000551Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (411 aa)    
Predicted Functional Partners:
BK809_0005026
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
 0.911
BK809_0002918
60S ribosomal protein L35.
  
 
 0.908
BK809_0007973
Putative 60s ribosomal protein l5.
  
 
 0.906
BK809_0003030
60S ribosomal protein L26-1.
  
   0.897
BK809_0006038
Putative 60s ribosomal protein l25.
  
 
 0.890
BK809_0007162
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.883
BK809_0001972
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 
 0.872
BK809_0001458
37S ribosomal protein SWS2, mitochondrial; Belongs to the universal ribosomal protein uS13 family.
  
   0.870
BK809_0007768
COBW domain-containing protein 1.
    
 
 0.858
BK809_0007500
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
   0.852
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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