STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0007966Homeobox protein YOX1. (533 aa)    
Predicted Functional Partners:
BK809_0000624
Putative mads box transcription factor mcm1.
    
 0.881
BK809_0007962
Putative polyamine oxidase 4.
 
  
   0.701
BK809_0003008
Chromatin structure-remodeling complex subunit sfh1.
    
 0.625
BK809_0002849
Uncharacterized protein.
    
 0.597
BK809_0006383
GATA type zinc finger protein asd-4.
    
 0.572
BK809_0001708
White collar 2 protein.
    
 0.572
BK809_0001718
Nitrogen regulatory protein areA.
    
 0.572
BK809_0004086
Nitrogen regulatory protein areA.
    
 0.572
BK809_0004255
Clock-controlled protein 8.
    
 0.572
BK809_0003530
GATA factor SREP.
    
 0.572
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.