STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002777Putative nucleoporin POM152-like protein. (1285 aa)    
Predicted Functional Partners:
BK809_0004183
Tryptophan synthase.
  
 
 0.852
BK809_0002165
Cystathionine gamma-synthase.
   
 
 0.831
BK809_0007294
Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 0.830
BK809_0004825
Alanine--glyoxylate aminotransferase 1.
   
 0.793
BK809_0006326
Homoserine dehydrogenase.
   
 0.782
BK809_0006153
Nucleoporin NIC96.
    
 
 0.780
BK809_0007300
Putative nucleoporin.
   
 
 0.766
BK809_0005035
Putative nuclear envelope protein.
    
 
 0.758
BK809_0002531
Inner nuclear membrane protein SRC1.
   
 
 0.747
BK809_0002656
Threonine dehydratase.
   
 
 0.746
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.