STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0008073COP9 signalosome complex subunit 5. (324 aa)    
Predicted Functional Partners:
BK809_0007411
Putative cop9 signalosome complex subunit 4.
   
 0.998
BK809_0005473
COP9 signalosome complex subunit 2.
   
 0.998
BK809_0006651
COP9 signalosome complex subunit 1.
   
 0.996
BK809_0004618
COP9 signalosome complex subunit 6.
   
 0.996
BK809_0002544
COP9 signalosome complex subunit 3.
   
 0.995
BK809_0002437
Putative nedd8-like protein.
   
 0.978
BK809_0006759
COP9 signalosome complex subunit 7a.
    
 0.975
BK809_0005639
Putative 26s proteasome non-atpase regulatory subunit 12.
   
 0.968
BK809_0006021
E3 ubiquitin-protein ligase RBX1.
   
 0.960
BK809_0002896
Elongin-C; Belongs to the SKP1 family.
   
 0.945
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.