STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002869Putative agmatinase 2; Belongs to the arginase family. (403 aa)    
Predicted Functional Partners:
BK809_0007866
Putative spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 
 0.943
BK809_0000702
Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.919
BK809_0000466
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.919
BK809_0004104
Putative agmatinase 1; Belongs to the arginase family.
  
  
 
0.895
BK809_0007012
Urea amidolyase.
    
 0.819
BK809_0004074
Phenylalanine ammonia-lyase.
  
 
 0.784
BK809_0001588
Putative agmatinase 1; Belongs to the arginase family.
  
  
 
0.745
BK809_0005009
Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
   
 0.711
BK809_0005004
Putative argininosuccinate lyase.
     
 0.652
BK809_0002366
Ornithine aminotransferase.
  
 0.648
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.