STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0007943Peroxisomal membrane protein PEX29. (422 aa)    
Predicted Functional Partners:
BK809_0003735
ATP-dependent bile acid permease.
 
 
   0.898
BK809_0006405
Nitrate reductase [NADH] 1.
    
 0.748
BK809_0006514
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.748
BK809_0004183
Tryptophan synthase.
    
 0.718
BK809_0004252
Werner syndrome ATP-dependent helicase.
    
 0.649
BK809_0002410
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.574
BK809_0002954
Double-strand break repair protein mus-23; Belongs to the MRE11/RAD32 family.
    
 0.562
BK809_0006790
DNA repair protein rad50.
    
  0.556
BK809_0004285
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
    
 0.537
BK809_0000527
Nibrin.
    
 0.509
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.