STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0003031C2H2-type domain-containing protein. (470 aa)    
Predicted Functional Partners:
BK809_0001946
Chromatin remodeling factor mit1.
   
 0.957
BK809_0004920
SH3 domain-containing protein.
    
 0.819
BK809_0006405
Nitrate reductase [NADH] 1.
    
  0.742
BK809_0006514
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.742
BK809_0000125
Histone deacetylase clr3.
   
 0.668
BK809_0007783
Histone deacetylase HOS3.
   
 0.596
BK809_0003816
Uncharacterized protein.
    
  0.588
BK809_0004269
Putative rna polymerase iii transcription factor.
    
 0.583
BK809_0002267
37S ribosomal protein mrp4, mitochondrial.
   
  0.583
BK809_0001005
30S ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.
   
  0.582
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.