STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0002975Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (654 aa)    
Predicted Functional Partners:
BK809_0003632
G-patch domain-containing protein.
   
 0.994
BK809_0000553
Pre-mRNA-processing factor 17.
   
 0.993
BK809_0000427
U2 small nuclear ribonucleoprotein A.
   
 0.990
BK809_0005023
DNA-damage-repair/toleration protein, chloroplastic.
 
 
 0.988
BK809_0002293
Putative ATP-dependent RNA helicase prh1.
  
0.985
BK809_0003090
Pre-mRNA-splicing factor cef1.
   
 0.983
BK809_0005807
Putative cell cycle control protein cwf14.
   
 0.979
BK809_0001011
Putative nucleolar protein nop58.
   
 
 0.971
BK809_0007206
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.967
BK809_0002937
Putative small nuclear ribonucleoprotein F.
   
 0.967
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.