STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005378Uncharacterized protein. (174 aa)    
Predicted Functional Partners:
BK809_0004920
SH3 domain-containing protein.
    
 0.806
BK809_0000585
Pescadillo-like protein.
   
 0.671
BK809_0005641
Pre-rRNA-processing protein crb3/ipi3.
   
 0.651
BK809_0001926
Pre-rRNA-processing protein ipi1.
   
 0.630
BK809_0001444
Myosin type-2 heavy chain 1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.597
BK809_0002259
Polynucleotide 5'-hydroxyl-kinase grc3.
   
  0.594
BK809_0005915
Alpha-actinin-like protein 1.
   
 0.579
BK809_0005978
CRIB domain-containing protein.
   
 0.579
BK809_0003018
Nuclear GTP-binding protein NUG1.
   
  0.536
BK809_0002538
Xylosyltransferase oxt.
    
 0.533
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.