STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005520Putative endo-beta-1,4-glucanase D. (379 aa)    
Predicted Functional Partners:
BK809_0002954
Double-strand break repair protein mus-23; Belongs to the MRE11/RAD32 family.
    
 0.930
BK809_0006790
DNA repair protein rad50.
    
 0.821
BK809_0004920
SH3 domain-containing protein.
    
 0.764
BK809_0005054
MHYT domain-containing protein.
    
 0.663
BK809_0004097
MHYT domain-containing protein.
    
 0.663
BK809_0006923
Uncharacterized protein.
    
 0.635
BK809_0004923
DUF2439 domain-containing protein.
    
 0.635
BK809_0001366
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.618
BK809_0001178
Adenosine kinase.
    
 0.617
BK809_0004997
Putative serine-threonine rich.
    
 0.615
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.