STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005627ATP-dependent RNA helicase DED1; Belongs to the DEAD box helicase family. (612 aa)    
Predicted Functional Partners:
BK809_0002620
Putative pre-mrna splicing factor prp1.
    
 0.925
BK809_0000522
Eukaryotic translation initiation factor 4E-1; Belongs to the eukaryotic initiation factor 4E family.
    
 0.867
BK809_0003983
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.865
BK809_0003090
Pre-mRNA-splicing factor cef1.
    
 
 0.864
BK809_0007582
ATP synthase subunit gamma, mitochondrial.
   
 
 0.859
BK809_0007423
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.789
BK809_0001750
Putative atp synthase oligomycin sensitivity conferral.
  
 
 0.782
BK809_0001900
ATP synthase subunit d, mitochondrial; Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the cent [...]
   
   0.758
BK809_0000585
Pescadillo-like protein.
   
  0.750
BK809_0006980
ATP-dependent RNA helicase DBP2.
  
0.742
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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