STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BK809_0005504Glucan endo-1,3-alpha-glucosidase agn1. (257 aa)    
Predicted Functional Partners:
BK809_0004397
Uncharacterized protein.
   
 0.625
BK809_0007698
Deoxyuridine 5'-triphosphate nucleotidohydrolase.
   
 0.625
BK809_0002608
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
    
  0.590
BK809_0005363
Uncharacterized protein.
    
 0.590
BK809_0006250
Nuclear transport factor 2.
    
 0.589
BK809_0007589
ATP-dependent DNA helicase mph1.
    
 0.569
BK809_0001274
Rho1 guanine nucleotide exchange factor 1.
    
 0.566
BK809_0003123
Replication factor A protein 2.
    
  0.564
BK809_0007609
Nuclear protein localization protein 4.
    
  0.563
BK809_0001886
DNA repair protein rad16.
    
 0.549
Your Current Organism:
Diplodia seriata
NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.