BK809_0006026 protein (Diplodia seriata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BK809_0006026

Deoxyhypusine synthase. (366 aa)

Predicted Functional Partners:

BK809_0006528

0.987

BK809_0001426

0.966

LIA1

0.907

BK809_0002574

0.579

BK809_0007866

0.573

BK809_0004298

0.570

BK809_0003459

0.554

BK809_0003901

0.533

BK809_0001384

0.518

BK809_0000702

0.516

Your Current Organism:

Diplodia seriata

NCBI taxonomy Id: 420778
Other names: Botryosphaeria obtusa, CBS 112555, D. seriata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BK809_0000702	BK809_0003901	A0A0G2EQ39	A0A0G2H033	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Putative s-adenosylmethionine decarboxylase proenzyme.	0.561
BK809_0000702	BK809_0006026	A0A0G2EQ39	A0A1S8BQ53	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Deoxyhypusine synthase.	0.516
BK809_0000702	BK809_0007866	A0A0G2EQ39	A0A0G2E4A4	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Putative spermidine synthase; Belongs to the spermidine/spermine synthase family.	0.949
BK809_0000702	LIA1	A0A0G2EQ39	A0A1S8BEE0	Putative ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.	0.435
BK809_0001384	BK809_0001426	A0A1S8B8X5	A0A1S8B8Y8	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Woronin body major protein.	0.613
BK809_0001384	BK809_0002574	A0A1S8B8X5	A0A1S8B336	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.749
BK809_0001384	BK809_0003459	A0A1S8B8X5	A0A1S8BFP6	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Phenylalanine--tRNA ligase alpha subunit.	0.591
BK809_0001384	BK809_0006026	A0A1S8B8X5	A0A1S8BQ53	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Deoxyhypusine synthase.	0.518
BK809_0001384	BK809_0006528	A0A1S8B8X5	A0A1S8B4F4	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	Eukaryotic translation initiation factor 5A.	0.613
BK809_0001426	BK809_0001384	A0A1S8B8Y8	A0A1S8B8X5	Woronin body major protein.	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.613
BK809_0001426	BK809_0002574	A0A1S8B8Y8	A0A1S8B336	Woronin body major protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.447
BK809_0001426	BK809_0003459	A0A1S8B8Y8	A0A1S8BFP6	Woronin body major protein.	Phenylalanine--tRNA ligase alpha subunit.	0.531
BK809_0001426	BK809_0006026	A0A1S8B8Y8	A0A1S8BQ53	Woronin body major protein.	Deoxyhypusine synthase.	0.966
BK809_0001426	BK809_0007866	A0A1S8B8Y8	A0A0G2E4A4	Woronin body major protein.	Putative spermidine synthase; Belongs to the spermidine/spermine synthase family.	0.531
BK809_0001426	LIA1	A0A1S8B8Y8	A0A1S8BEE0	Woronin body major protein.	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor.	0.908
BK809_0002574	BK809_0001384	A0A1S8B336	A0A1S8B8X5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.749
BK809_0002574	BK809_0001426	A0A1S8B336	A0A1S8B8Y8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Woronin body major protein.	0.447
BK809_0002574	BK809_0006026	A0A1S8B336	A0A1S8BQ53	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Deoxyhypusine synthase.	0.579
BK809_0002574	BK809_0006528	A0A1S8B336	A0A1S8B4F4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Eukaryotic translation initiation factor 5A.	0.447
BK809_0003459	BK809_0001384	A0A1S8BFP6	A0A1S8B8X5	Phenylalanine--tRNA ligase alpha subunit.	Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.591