rpmG protein (Lactococcus garvieae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

rpmG

50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa)

Predicted Functional Partners:

rpmF

0.995

rpsI

0.977

rpmB

0.961

rpsZ

0.960

rpsR

0.959

rplX

0.958

rpsD

0.958

rpsC

0.957

rpmD

0.957

rpsK

0.956

Your Current Organism:

Lactococcus garvieae

NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplX	rpmB	LCGL_0164	LCGL_0102	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.989
rplX	rpmD	LCGL_0164	LCGL_0174	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L30.	0.999
rplX	rpmF	LCGL_0164	LCGL_0051	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.986
rplX	rpmG	LCGL_0164	LCGL_0050	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.958
rplX	rpsC	LCGL_0164	LCGL_0159	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplX	rpsD	LCGL_0164	LCGL_1816	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
rplX	rpsI	LCGL_0164	LCGL_1950	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.994
rplX	rpsK	LCGL_0164	LCGL_0185	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.998
rplX	rpsR	LCGL_0164	LCGL_1899	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.984
rplX	rpsZ	LCGL_0164	LCGL_0166	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.999
rpmB	rplX	LCGL_0102	LCGL_0164	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.989
rpmB	rpmD	LCGL_0102	LCGL_0174	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L30.	0.983
rpmB	rpmF	LCGL_0102	LCGL_0051	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.996
rpmB	rpmG	LCGL_0102	LCGL_0050	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.961
rpmB	rpsC	LCGL_0102	LCGL_0159	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.979
rpmB	rpsD	LCGL_0102	LCGL_1816	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.983
rpmB	rpsI	LCGL_0102	LCGL_1950	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.989
rpmB	rpsK	LCGL_0102	LCGL_0185	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.988
rpmB	rpsR	LCGL_0102	LCGL_1899	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.993
rpmB	rpsZ	LCGL_0102	LCGL_0166	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.	0.995