Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LCGL_0072Oxidoreductase. (303 aa)    
Predicted Functional Partners:
LCGL_1883
Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.705
LCGL_0303
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.650
LCGL_1025
Oxidoreductase.
 
 
 0.564
LCGL_0073
Conserved hypothetical protein; Belongs to the UPF0297 family.
       0.521
LCGL_0074
Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.521
LCGL_0075
Conserved hypothetical protein; Belongs to the UPF0473 family.
       0.507
rpmH
50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
       0.477
LCGL_1834
Oxidoreductase.
  
 
 0.467
LCGL_0552
Ankyrin repeat family protein.
  
 
 0.457
LCGL_0263
Thioredoxin.
   
 
 0.453
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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