Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0101Conserved hypothetical protein. (122 aa)    
Predicted Functional Partners:
LCGL_0100
Conserved hypothetical protein.
 
  
 0.995
LCGL_0765
Conserved hypothetical protein.
 
  
 0.815
LCGL_1214
Conserved hypothetical protein.
 
    0.699
LCGL_0073
Conserved hypothetical protein; Belongs to the UPF0297 family.
  
  
 0.651
LCGL_1639
Conserved hypothetical protein.
 
    0.645
LCGL_0324
Conserved hypothetical protein.
 
    0.632
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.608
LCGL_1172
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.568
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.548
LCGL_0099
Ferrous ion transport protein A.
       0.455
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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