LCGL_0108 protein (Lactococcus garvieae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LCGL_0108

Truncated glycosyltransferase. (139 aa)

Predicted Functional Partners:

LCGL_0109

0.654

LCGL_0110

0.645

LCGL_0112

0.606

LCGL_0437

0.578

LCGL_1864

0.536

LCGL_0107

0.501

LCGL_0113

0.435

LCGL_0111

0.423

Your Current Organism:

Lactococcus garvieae

NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
LCGL_0107	LCGL_0108	Truncated glycosyltransferase.	Truncated glycosyltransferase.	0.501
LCGL_0107	LCGL_0109	Truncated glycosyltransferase.	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.580
LCGL_0107	LCGL_0110	Truncated glycosyltransferase.	dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC.	0.620
LCGL_0107	LCGL_0112	Truncated glycosyltransferase.	dTDP-D-glucose 4,6-dehydratase RmlB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.540
LCGL_0107	LCGL_0113	Truncated glycosyltransferase.	dTDP-4-dehydrorhamnose reductase RmlD; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.434
LCGL_0107	LCGL_0437	Truncated glycosyltransferase.	Sugar transferase EpsD.	0.682
LCGL_0107	LCGL_1864	Truncated glycosyltransferase.	1,4-alpha-glucan branching enzyme.	0.536
LCGL_0108	LCGL_0107	Truncated glycosyltransferase.	Truncated glycosyltransferase.	0.501
LCGL_0108	LCGL_0109	Truncated glycosyltransferase.	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	0.654
LCGL_0108	LCGL_0110	Truncated glycosyltransferase.	dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC.	0.645
LCGL_0108	LCGL_0111	Truncated glycosyltransferase.	Conserved hypothetical protein.	0.423
LCGL_0108	LCGL_0112	Truncated glycosyltransferase.	dTDP-D-glucose 4,6-dehydratase RmlB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.606
LCGL_0108	LCGL_0113	Truncated glycosyltransferase.	dTDP-4-dehydrorhamnose reductase RmlD; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.435
LCGL_0108	LCGL_0437	Truncated glycosyltransferase.	Sugar transferase EpsD.	0.578
LCGL_0108	LCGL_1864	Truncated glycosyltransferase.	1,4-alpha-glucan branching enzyme.	0.536
LCGL_0109	LCGL_0107	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Truncated glycosyltransferase.	0.580
LCGL_0109	LCGL_0108	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Truncated glycosyltransferase.	0.654
LCGL_0109	LCGL_0110	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC.	0.998
LCGL_0109	LCGL_0111	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	Conserved hypothetical protein.	0.780
LCGL_0109	LCGL_0112	Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.	dTDP-D-glucose 4,6-dehydratase RmlB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.	0.999