Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0123Conserved hypothetical protein. (117 aa)    
Predicted Functional Partners:
LCGL_0122
Glycosyltransferase.
 
   
 0.963
LCGL_0121
Conserved hypothetical protein.
 
     0.800
LCGL_0132
Conserved hypothetical protein.
 
     0.711
LCGL_0120
Rhamnosyltransferase.
 
     0.708
LCGL_0124
Putative glycosyltransferase.
     
 0.674
mapZ
Conserved hypothetical protein; Early cell division protein that marks the future cell division site and supports proper FtsZ ring positioning.
  
     0.648
LCGL_0119
Glycosyltransferase CpsI.
     
 0.542
LCGL_0013
Conserved hypothetical protein.
  
     0.522
LCGL_1253
Exopolysaccharide biosynthesis protein EpsL.
  
     0.480
LCGL_0125
Putative glycosyltransferase.
     
 0.476
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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