Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0130Repeat unit transporter. (481 aa)    
Predicted Functional Partners:
LCGL_0129
UDP-galactopyranose mutase.
 
  
 0.961
LCGL_0128
Putative glycosyltransferase.
 
  
 0.931
LCGL_0437
Sugar transferase EpsD.
 
  
 0.888
LCGL_0131
Conserved hypothetical protein.
       0.825
LCGL_0132
Conserved hypothetical protein.
       0.800
LCGL_0126
Putative glycosyltransferase.
  
    0.711
LCGL_0109
Glucose-1-phosphate thymidylyltransferase RmlA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.695
LCGL_0110
dTDP-4-keto-6-deoxy-D-glucose 3,5-epimerase RmlC.
  
  
 0.688
LCGL_0112
dTDP-D-glucose 4,6-dehydratase RmlB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.679
LCGL_0444
UDP-glucose 6-dehydrogenase.
  
  
 0.678
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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