Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0137Competence protein. (314 aa)    
Predicted Functional Partners:
LCGL_0136
Competence protein.
 
 
 0.999
LCGL_0141
Conserved hypothetical protein.
  
  
 0.988
LCGL_0138
Competence protein.
 
  
 0.953
LCGL_0140
Conserved hypothetical protein.
  
  
 0.947
LCGL_1761
Type IV prepilin peptidase.
 
  
 0.884
LCGL_0139
Competence protein.
  
  
 0.871
LCGL_0404
Competence protein ComEC.
 
  
 0.865
LCGL_0402
Competence protein ComEA.
  
  
 0.827
LCGL_0799
Competence protein ComFA.
  
  
 0.823
LCGL_1616
Conserved hypothetical protein.
 
   
 0.720
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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