Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0179Zinc ABC transporter permease subunit. (269 aa)    
Predicted Functional Partners:
LCGL_0180
Zinc ABC transporter ATP-binding subunit.
 
 0.999
LCGL_0181
Zinc transport transcription regulator.
  
  
 0.996
LCGL_0143
Zinc ABC transporter substrate-binding subunit; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.993
LCGL_1531
Manganese ABC transporter ATP-binding component.
 
 
 0.944
LCGL_1533
Manganese ABC transporter substrate-binding component; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.930
ecfA
ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
 0.620
LCGL_0744
Amino acid ABC transporter permease component.
  
 
 0.573
LCGL_1532
Manganese ABC transporter permease component.
 
  
 
0.537
LCGL_1067
Glycine betaine ABC transporter permease and substrate-binding component.
    
 0.519
ecfA-2
ABC transporter ATP-binding component; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
     
 0.514
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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