Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0216Oligopeptide ABC transporter substrate-binding subunit. (557 aa)    
Predicted Functional Partners:
LCGL_0217
Oligopeptide ABC trasporter permease subunit.
 
 0.999
LCGL_0220
Oligopeptide ABC trasporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 0.997
LCGL_0218
Oligopeptide ABC trasporter permease subunit.
 
 
 0.996
LCGL_0219
Oligopeptide ABC trasporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 
 0.996
LCGL_0449
Amino acid ABC transporter substrate-binding component.
  
 
 0.570
LCGL_0455
Glutamine ABC transporter permease and substrate-binding components.
  
 
 0.570
LCGL_0303
Pyruvate-flavodoxin oxidoreductase.
     
 0.492
LCGL_1963
Penicillin-binding protein 3; Belongs to the peptidase S11 family.
     
 0.440
LCGL_0744
Amino acid ABC transporter permease component.
  
 
 0.426
LCGL_1911
Glutamine synthetase repressor.
 
     0.421
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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