Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCGL_0220Oligopeptide ABC trasporter ATP-binding subunit; Belongs to the ABC transporter superfamily. (311 aa)    
Predicted Functional Partners:
LCGL_0217
Oligopeptide ABC trasporter permease subunit.
 
 0.999
LCGL_0218
Oligopeptide ABC trasporter permease subunit.
 0.999
LCGL_0216
Oligopeptide ABC transporter substrate-binding subunit.
 
 0.997
LCGL_0219
Oligopeptide ABC trasporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 
0.997
ecfT
ABC transporter permease component; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.842
LCGL_0221
Conserved hypothetical protein.
       0.472
LCGL_0724
Asparaginase.
  
  
 0.471
cshA
ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily.
     
 0.465
LCGL_0527
Iron compound ABC transporter ATP-binding component.
     
0.464
LCGL_0209
Tellurite resistance protein.
   
    0.415
Your Current Organism:
Lactococcus garvieae
NCBI taxonomy Id: 420890
Other names: L. garvieae Lg2, Lactococcus garvieae Lg2, Lactococcus garvieae str. Lg2, Lactococcus garvieae strain Lg2
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