Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LCGL_0260 | LCGL_0261 | LCGL_0260 | LCGL_0261 | Conserved hypothetical protein. | Glutamyl aminopeptidase. | 0.583 |
LCGL_0260 | LCGL_0263 | LCGL_0260 | LCGL_0263 | Conserved hypothetical protein. | Thioredoxin. | 0.421 |
LCGL_0260 | LCGL_1883 | LCGL_0260 | LCGL_1883 | Conserved hypothetical protein. | Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | 0.448 |
LCGL_0260 | atpE | LCGL_0260 | LCGL_0406 | Conserved hypothetical protein. | F0F1-type ATP synthase c subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.471 |
LCGL_0260 | dinG | LCGL_0260 | LCGL_1505 | Conserved hypothetical protein. | ATP-dependent DNA helicase; 3'-5' exonuclease. | 0.534 |
LCGL_0260 | menE | LCGL_0260 | LCGL_0635 | Conserved hypothetical protein. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.627 |
LCGL_0260 | rplF | LCGL_0260 | LCGL_0171 | Conserved hypothetical protein. | 50S Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.595 |
LCGL_0260 | rpoA | LCGL_0260 | LCGL_0186 | Conserved hypothetical protein. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.451 |
LCGL_0260 | rpoB | LCGL_0260 | LCGL_0390 | Conserved hypothetical protein. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.471 |
LCGL_0260 | rpoZ | LCGL_0260 | LCGL_1656 | Conserved hypothetical protein. | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.459 |
LCGL_0261 | LCGL_0260 | LCGL_0261 | LCGL_0260 | Glutamyl aminopeptidase. | Conserved hypothetical protein. | 0.583 |
LCGL_0261 | LCGL_0263 | LCGL_0261 | LCGL_0263 | Glutamyl aminopeptidase. | Thioredoxin. | 0.554 |
LCGL_0263 | LCGL_0260 | LCGL_0263 | LCGL_0260 | Thioredoxin. | Conserved hypothetical protein. | 0.421 |
LCGL_0263 | LCGL_0261 | LCGL_0263 | LCGL_0261 | Thioredoxin. | Glutamyl aminopeptidase. | 0.554 |
LCGL_0263 | menE | LCGL_0263 | LCGL_0635 | Thioredoxin. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.471 |
LCGL_0263 | rpoB | LCGL_0263 | LCGL_0390 | Thioredoxin. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.705 |
LCGL_1883 | LCGL_0260 | LCGL_1883 | LCGL_0260 | Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | Conserved hypothetical protein. | 0.448 |
LCGL_1883 | menE | LCGL_1883 | LCGL_0635 | Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | O-succinylbenzoic acid-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily. | 0.731 |
LCGL_1883 | rpoA | LCGL_1883 | LCGL_0186 | Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.408 |
LCGL_1883 | rpoB | LCGL_1883 | LCGL_0390 | Alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.409 |
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